KBase: The Department of Energy Systems Biology Knowledgebase

KBase is an open platform for comparative functional genomics and systems biology for microbes, plants and their communities, and for sharing results and methods with other scientists.


Publications that mention KBase

A growing number of scientists are using KBase’s tools and data to facilitate their research. Our new Publications page lists and links to published papers that mention work done using KBase. Some of these have Narratives associated with them that let you see and reproduce the workflows described in the papers. (Additional research Narratives, not […]

PlantSEED Metabolic Modeling Workshop

The 2016 PlantSEED Metabolic Modeling Workshop, co-organized by KBase scientists Chris Henry and Sam Seaver, was held at Northwestern University in Evanston, IL from August 4-5, 2016. The workshop included talks and hands-on training on using PlantSEED and KBase to do plant genome annotation, metabolic modeling (including gap filling and flux balance analysis) and transcriptome […]

Poster at Pan–American Congress on Plants and BioEnergy

At the 5th Pan–American Congress on Plants and BioEnergy last week in Santa Fe, New Mexico, KBase scientist Vivek Kumar presented a poster titled, “The DOE Systems Biology Knowledgebase: A cyberinfrastructure for sharing and integrating data and analytical tools to accelerate bioenergy feedstock research.” The poster described KBase’s growing array of tools for analyzing plant […]

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